Egor Zindy's repositories
bioimagebook.github.io
An introduction to bioimage analysis - http://bioimagebook.github.io
BoZoN
Minimalist Drag & drop file sharing app (version 2.4 build 15)
cellpose
a generalist algorithm for cellular segmentation
cellprofiler_plugins
My CellProfiler plugins
czitools_lite
This repository provides a collection of tools to simplify reading CZI (Carl Zeiss Image) pixel and metadata in Python. In addition it also contains other useful utilities to visualize CZI images inside Napari.
md2googleslides
Generate Google Slides from markdown
NanoJ-Fluidics
Manual, source-code and binaries for the NanoJ-Fluidics project
napari
napari: a fast, interactive, multi-dimensional image viewer for python
napari-czifile2
Carl Zeiss Image (.czi) file support for napari
piccolo
A fast, user friendly ORM and query builder which supports asyncio.
piccolo_admin
A powerful web admin for your database.
piccolo_api
ASGI middleware for authentication, rate limiting, and building CRUD endpoints.
python3-mega
Wrapper around the Mega API - python3 version
pytrackmate
Import Trackmate XML files in Python as Pandas dataframe
qupath
QuPath - Open Source Digital Pathology
qupath-docs
QuPath documentation
qupath-extension-align
QuPath extension to interactively align images
qupath-extension-cellpose
an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.
qupath-extension-jinput
jinput support for QuPath navigation (3Dconnexion SpaceMouse)
qupath-translations
QuPath Translation effort
RICS
RICS notes
SlicerSandbox
Collection of utilities that are not polished implementations but can be useful to users
Spellcheck-Website-Tampermonkey-Script
Enables browser and plugin spell checking ability within static website content. Simplifies QA workflows when no other tools or text source access are viable alternatives.
transferwee
Download/upload files via wetransfer.com
valis
Virtual Alignment of pathoLogy Image Series