XiaZhao's repositories
antigen.garnish
Ensemble Antigen Prediction and Quality Analysis from DNA Variants and Proteins in R
BBMap
(Not Offical) BBMap short read aligner, and other bioinformatic tools.
BMI_micro
BMI_CRC related microbiome analysis
crAssphage
Sequencing and analysis of crAssphage regions from around the globe
EcoFunPrimer
primer design pipeline
gatk4-pathseq
This repo is archived, the these workflows are still available in the GATK repository under the scripts directory. The workflows are also organized in Dockstore in the GATK Best Practices Workflows collection.
kraken-nf
Simple Kraken2 Nextflow pipeline
kraken2
The second version of the Kraken taxonomic sequence classification system
Mash
Fast genome and metagenome distance estimation using MinHash
megahit
Ultra-fast and memory-efficient (meta-)genome assembler
micro-frontends
extending the microservice paradigms to web development
MicrobiomeAnalystR
A companion R package for the MicrobiomeAnalyst web server
MRScore_Tumor
antitumor_signature
Nephele
Nephele Pipeline Scripts
nextflow_microbes_pick
A pipline for 16S rRNA based metagenomic-seq data
pan-genome-analysis
Processing pipeline for pan-genome visulization and exploration
PGAP-nf
Nextflow tool running the NCBI Prokaryotic Genome Annotation Pipeline
premessa
R package for pre-processing of mass and flow cytometry data
rfUtilities
R package for random forests model selection, inference, evaluation and validation
scRNAseq_Benchmark
Bench-marking classification tools for scRNA-seq data
STAMP
Statistical Analysis of Metagenomic Profiles
tcga
Microbial analysis in TCGA data
TMB
The tumor microbiome analysis pipeline
TuMicroSy16S
16S_based sequece data
virID
Viral Identification and Discovery - A viral characterization pipeline built in Nextflow.
wu-kan.github.io
:sparkles: my personal page & template for jekyll-theme-WuK