zhangwenda's repositories
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Four-fold_degenerate_bedmaker
A python script to identify four-fold degenerate sites from a CDS fasta
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EasySpeciesTree
Easily construct the ML species tree with single-copy gene shared by different species.
JaltGenome
Raw scripts for de novo assembling a Jaltomata genome. Publication: Wu, M., Kostyun, J. and Moyle, L., 2018. Genome sequence of Jaltomata addresses rapid reproductive trait evolution and enhances comparative genomics in the hyper-diverse Solanaceae. Genome Biology and Evolution, evy274.
TrimmingPipeline
Python pipeline for PBS script creation for trimming RNA-Seq data with rCorrector, BBDuk, and generating FastQC reports