zhangrengang / cebai

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覆盖度评估

覆盖度评估,核心代码:

# 基于不同的reads,选择各种软件生成bam
samtools depth $BAM -a -a | gzip -c > mapping.depth.gz

# 全基因组coverage评估
python ~/src/depth_plot.py mapping.depth.gz mapping.depth &

# BUSCO基因区coverage评估, run_ref.fa/full*tsv是BUSCO输出的full*tsv文件
python ~/src/depth_plot_busco.py mapping.depth.gz mapping.depth.busco run_ref.fa/full*tsv & 
wait

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