zhangrengang's repositories
Centromics
Centromics: visualing centromeres with multiple omics data
subgenome_phasing_example
An Example of Subgenome Phasing for Complex Allopolyploidy
degeneracy
Get 0-fold and 4-fold degeneracy sites
orthoindex
Robust identification of orthologous synteny with the Orthology Index
REPcluster
Clustering repeat sequences with kmer-based distance
3d-dna
3D de novo assembly (3D DNA) pipeline
evolution_example
Example for evlutionary analyses with Orthology Index
fbpolisher
polishing noisy genome assembly with short reads of high-quality
matplotlib
matplotlib: plotting with Python
MicrobePhylogenomics
A pipeline to construct phylogenomic tree for microbial genomes
mysql2sqlite
Converts MySQL dump to SQLite3 compatible dump
NextPolish
Fast and accurately polish the genome generated by noisy long reads.
smartdenovo
Ultra-fast de novo assembler using long noisy reads