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Jiankun_Zhang (zhang-jiankun)

zhang-jiankun

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Company:PKU

Location:Beijing

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Jiankun_Zhang's starred repositories

SketchyBar

A highly customizable macOS status bar replacement

Language:CLicense:GPL-3.0Stargazers:5290Issues:0Issues:0

Hafner2022

code associated with Hafner 2022 paper on cohesin and ctcf degron lines

Language:PythonStargazers:1Issues:0Issues:0

Circe

Co-accessibility network from ATAC-seq data. Python code, based on Cicero package (R).

Language:PythonLicense:AGPL-3.0Stargazers:11Issues:0Issues:0

skggm

Scikit-learn compatible estimation of general graphical models

Language:PythonLicense:MITStargazers:237Issues:0Issues:0

Scillus

R Package for Single-Cell Dataset Processing and Visualization

Language:RLicense:GPL-3.0Stargazers:51Issues:0Issues:0

igm

Integrated Genome Modeling

Language:PythonLicense:GPL-3.0Stargazers:11Issues:0Issues:0

pymol_viridis

Colorblind-friendly, perceptually uniform palettes for pymol

Language:PythonLicense:MITStargazers:18Issues:0Issues:0

CuratedAtlasQueryR

Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.

Language:RLicense:GPL-3.0Stargazers:88Issues:0Issues:0

transPlotR

An elegant package to visualize gene structures

Language:RLicense:NOASSERTIONStargazers:67Issues:0Issues:0

positron

Positron, a next-generation data science IDE

Language:TypeScriptLicense:NOASSERTIONStargazers:1848Issues:0Issues:0

millefy

Millefy: Genome browser-like visualization of single-cell RNA-seq dataset

Language:RLicense:NOASSERTIONStargazers:27Issues:0Issues:0

LiMCA

Language:Jupyter NotebookLicense:MITStargazers:7Issues:0Issues:0

pomegranate

Fast, flexible and easy to use probabilistic modelling in Python.

Language:PythonLicense:MITStargazers:3306Issues:0Issues:0

hmm_bigwigs

using hmm on bigwigs

Language:PythonStargazers:7Issues:0Issues:0

destiny

R package for single cell and other data analysis using diffusion maps

Language:RLicense:GPL-3.0Stargazers:70Issues:0Issues:0

TCGAbiolinks

TCGAbiolinks

Language:RStargazers:286Issues:0Issues:0

immunedeconv

A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods

Language:RLicense:NOASSERTIONStargazers:428Issues:0Issues:0

scRepertoire

A toolkit for single-cell immune profiling

Language:RLicense:MITStargazers:297Issues:0Issues:0

scGROseq

scGRO-seq analyses codes

Language:Jupyter NotebookLicense:MITStargazers:8Issues:0Issues:0

TopoBenchmarkX

TopoBenchmarkX is a Python library designed to standardize benchmarking and accelerate research in Topological Deep Learning

Language:PythonLicense:MITStargazers:55Issues:0Issues:0

ADTnorm

ADTnorm normalizes the cell surface protein measurement of CITE-seq data, facilitating across batches and across studies data integration.

Language:RLicense:GPL-3.0Stargazers:18Issues:0Issues:0

Fun

Algorithm to identify chromatin fountains

Language:PythonLicense:MITStargazers:20Issues:0Issues:0

mariner

Explore the Hi-Cs

Language:RLicense:MITStargazers:10Issues:0Issues:0

omicverse

A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.

Language:Jupyter NotebookLicense:GPL-3.0Stargazers:304Issues:0Issues:0

graphtools

Tools for building and manipulating graphs in Python

Language:PythonLicense:GPL-3.0Stargazers:41Issues:0Issues:0

sge-integration

Repository for [TITLE] STAR protocol

Language:RLicense:MITStargazers:3Issues:0Issues:0

zsv

zsv+lib: tabular data swiss-army knife CLI + world's fastest (simd) CSV parser

Language:CLicense:MITStargazers:196Issues:0Issues:0

Umol

Protein-ligand structure prediction

Language:Jupyter NotebookStargazers:166Issues:0Issues:0

hictk

Blazing fast toolkit to work with .hic and .cool files

Language:C++License:MITStargazers:20Issues:0Issues:0

gStripe

Graph-based architectural stripe caller.

Language:PythonLicense:MITStargazers:1Issues:0Issues:0