Jiankun_Zhang's repositories
atac-seq-pipeline
ENCODE ATAC-seq pipeline
bioinfokit
Bioinformatics data analysis and visualization toolkit
cooler
A cool place to store your Hi-C
coolpuppy
A versatile tool to perform pile-up analysis on Hi-C data in .cool format.
cworld-dekker
perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)
fithic
Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture assays such as Hi-C.
hic-data-analysis-bootcamp
Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.
hickit
TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C
hickit-modified
modified from lh3/hickit, output cell barcode (split from read name) to the .pairs.gz file
id2id
bioinformatics python script
juicer
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
marsala
For better further of people.
orca
sequence-based prediction of multiscale genome structure from kilobase to whole-chromosome scale
pairtools
CLI tools to process mapped Hi-C data
pgltools
Paired Genomic Loci Tool Suite
rtfbs_db
Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.
sklearn_scipy2013
Scikit-learn tutorials for the Scipy 2013 conference
sklearn_tutorial
Tutorial for astronomy data processing with scikit-learn
slurmpy
submit jobs to slurm in Odyssey HPC
TELs
scripts for TEL project
zhangjk.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes