zcang

Awesome-Optimal-Transport-in-Deep-Learning

a collection of AWESOME things about Optimal Transport in Deep Learning

wl-mechanics

lts-sample-code

riemannian-metric-learning-ot

topembedding

neural-ode-tutorial

Repository for tutorial on Neural ODEs prepared for the UCL AI Society

unbalanced_gromov_wasserstein

Implementation of the Gromov-Wasserstein distance to the setting of Unbalanced Optimal Transport

Morse_Smale

Source code for the paper "Statistical Inference using the Morse-Smale Complex"

unnormalized-optimal-transport

A repository containing code for computing the unnormalized wasserstein distance.

awesome-topological-deep-learning

A curated list of topological deep learning (TDL) resources and links.

difftda

Persistence differentiation with Gudhi and Tensorflow

TopoLoss

Code for the NeurIPS 2019 paper: Topology-Preserving Deep Image Segmentation

ESICCC

ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods

goatools

Python library to handle Gene Ontology (GO) terms

dance

DANCE: a deep learning library and benchmark platform for single-cell analysis

OptimalTextures

An implementation of "Optimal Textures: Fast and Robust Texture Synthesis and Style Transfer through Optimal Transport"

netrd

A library for network {reconstruction, distances, dynamics}

Celegans-cell2cell

Analyses for cell-cell interactions in C. elegans

tradeSeq

TRAjectory-based Differential Expression analysis for SEQuencing data

chicken_heart

Spatiotemporal single-cell RNA sequencing of developing hearts reveals interplay between cellular differentiation and morphogenesis

scHiC_notes

Notes on single-cell Hi-C technologies, tools, and data

Pamona

The software of Pamona, a partial manifold alignment algorithm.

SCOT

Gromov-Wasserstein based optimal transport for aligning single-cell multi-omics data

scarches

Reference mapping for single-cell genomics

scArches-reproducibility

Reproducing result from the paper

GOT

Code accompanying the NeurIPS 2019 paper "GOT: An Optimal Transport framework for Graph comparison"

momix-notebook

TopologyLayer

A Topology Layer for Machine Learning : Persistent Homology + Features for PyTorch

scib

Benchmarking analysis of data integration tools

awesome-multi-omics

List of software packages for multi-omics analysis