zacswider

rye

a Hassle-Free Python Experience

spotiflow

Accurate and efficient spot detection for microscopy data

ruff

An extremely fast Python linter and code formatter, written in Rust.

ipysegment

manual image segmentation widget for jupyter

zed

Code at the speed of thought – Zed is a high-performance, multiplayer code editor from the creators of Atom and Tree-sitter.

docker-hollywood

Fake A Hollywood Hacker Screen.

r3bl-open-core

TUI framework and developer productivity apps in Rust 🦀

ijp-imagej-launcher

IJP ImageJ Launcher is native launcher that starts ImageJ 2 or Fiji

pycon-pandas-tutorial

PyCon 2015 Pandas tutorial materials

textual-paint

:art: MS Paint in your terminal.

data-engineering-zoomcamp

Free Data Engineering course!

mlops-zoomcamp

Free MLOps course from DataTalks.Club

tools

Things we use regularly

pyGPUreg

gitignore

A collection of useful .gitignore templates

nnUNet

volume-segmantics

A toolkit for semantic segmentation of volumetric data using PyTorch deep learning models

mypyc

Compile type annotated Python to fast C extensions

microfilm

Creating figures and animations for multi-channel images with a focus on microscopy.

LEEM-analysis

Quantitative Data Analysis for spectroscopic LEEM

ashlar

ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration

stitching

A Python package for fast and robust Image Stitching

3DUnetCNN

Pytorch 3D U-Net Convolution Neural Network (CNN) designed for medical image segmentation

pytorch-3dunet

3D U-Net model for volumetric semantic segmentation written in pytorch

ncv-image-registration

FFT method to register images using a Normalize CoVariance (NCV) metric

kivy

Open source UI framework written in Python, running on Windows, Linux, macOS, Android and iOS

Fiji_macros

RedLionfish

image_registration

Image Registration for Astronomy

PyPaperBot

PyPaperBot is a Python tool for downloading scientific papers using Google Scholar, Crossref, and SciHub.