zachcp

phylogeo

Mapping for Phyloseq

drawpeptides

small library for making animated gifs of peptides

ggrepel

:round_pushpin: Repel overlapping text labels away from each other.

JEBL

A Java library for evolutionary biology and bioinformatics, including objects representing biomolecular sequences, multiple sequence alignments and phylogenetic trees.

nycmaps

New York City maps for use with the maps package, ggplot and ggalt

phyloseq-tools

primitive

clojure clone of primitive

archaeopteryx-js

Html-Widget wrapper for archaeopteryx.js

augur

Pipeline components for real-time virus analysis

depict-clj

small clojure interface to CDK's depict

developments-in-next-generation-sequencing

Developments in next generation sequencing: instruments, read lengths, throughput. See

drat

Zach's drat repository

enviGCMS

GC/LC-MS data analysis for environmental science

htmlwidgetsgallery

jam-lib

Automatically exported from code.google.com/p/jam-lib

kekule

R htmlwidget for Kekule.js

mibig-json-pics

Graphvized Mibig

mibig-tools

Some helper functions for processing mibig json and gbk

MibigDomainData

Nucelotide sequences for Mibig protein domains defined by the PFAM-A hmms

paired-end-debarcoder

moved to https://github.com/esnapd/paired-end-debarcoder

PFAM-protein-data

Mapping Between PFAM and Uniprot IDs

phyloseq

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:

phyloTree

interactive phylogenetic tree viewer

piesonamap

draw piecharts on a map with ggplot

prokka

:zap: :aquarius: Rapid prokaryotic genome annotation

pysvg-py3-feedstock

A conda-smithy repository for pysvg-py3.

qiime-tools

utilities for Qiime workflows

quickd3maps-R

create maps with D3.js

soiltypefinder

App to use Lat/Long to find your USDA/FAO Soiltype Hosted on Google App Engine

ve-sequence-parsers

Convert genbank, fasta, sbol to JSON and back again!