zachcp

Daft

Distributed DataFrame for Python designed for the cloud, powered by Rust

elkjs

ELK's layout algorithms for JavaScript

evo

Biological foundation modeling from molecular to genome scale

RoseTTAFold-All-Atom

plip

Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme et al. (2021), https://doi.org/10.1093/nar/gkab294

crabml

a fast cross platform AI inference engine 🤖 using Rust 🦀 and WebGPU 🎮

interproscan

Genome-scale protein function classification

rf_diffusion_all_atom

Public RFDiffusionAA repo

seqviz

a JavaScript DNA, RNA, and protein sequence viewer

longshot

diploid SNV caller for error-prone reads

chemfiles

Library for reading and writing chemistry files

veryfasttree

Efficient phylogenetic tree inference for massive taxonomic datasets

trgt

Tandem repeat genotyping and visualization from PacBio HiFi data

BioT5

BioT5: Enriching Cross-modal Integration in Biology with Chemical Knowledge and Natural Language Associations (EMNLP 2023)

ska.rust

Split k-mer analysis – version 2

polaris

Foster the development of impactful AI models in drug discovery.

impg

implicit pangenome graph

udon

BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing

MINE-Database

Metabolic In silico Network Expansion (MINE) Database Construction and DB Logic

pafview

ggdag

:arrow_lower_left: :arrow_lower_right: An R package for working with causal directed acyclic graphs (DAGs)

scrubby

Background depletion/extraction using k-mer and/or alignment methods :panda_face:

BATH

Better Alignments with Translated HMMER

brick

BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons :microbe:

knn-for-homology

Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"

precogx

A predictor of GPCR couplings with G-proteins/B-arrs using Transformers

protein-visualizer

Visualizing the function of biological proteins through deep learning. MIT UROP 2024 project

kair

COnstraint-Based Reconstruction and Analysis in Rust

TOMBOMBADIL

Tree-free Omega Mapping By Observing Mutations of Bases and Amino acids Distributed Inside Loci

GapClean

A tool for cleaning sequence alignments.