Jianyu Yang's repositories
Snakemake_workshop
Example code for snakemake workshop
snakemake-pipeline-general
General rules could be used for specific purpose
bioinformatics
Script for bioinformatics analysis
rna-seq-star-deseq2
RNA-seq workflow using STAR and DESeq2
seqcode-core
SeqCode: Java code for the analysis of high-throughput sequencing data
atac-seq-standard-pipeline
workflow for standard ATAC-seq data analysis
bootcamp-central
PSU bootcamp on reproducible research
bpnet
Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them
chip-seq-standard-pipeline
workflow for standard ChIP-seq data analysis
chiptoolkit
Tool kit for chip-seq like data analysis
cplate
Digestion template-based deconvolution for chromatin structure inference.
dbyll
Stylish, minimalistic theme for jekyll.
dna-methylation-pipeline
Applied on TAB-seq, BS-seq, and other DNA methylation libraries
DreamChallenge
Scripts for Dream Challenge
FGO-Automata
一个简单的FGO脚本和API
mediumish-theme-jekyll
Jekyll Template - Mediumish
MNase-seq-workflow
A standard workflow on preprocessing MNase-seq data
pytorch-domain-adaptation
A collection of implementations of adversarial domain adaptation algorithms
redpill-tool-chain
这是一个测试项目，可能会有不可预测的事情发生（比如：毁损数据、烧毁硬件等等），请谨慎使用。
rna-seq-standard-pipeline
standard RNA-seq analysis pipeline (cloned from snakemake example workflow)
S3V2_IDEAS_ESMP
S3norm ver2 + IDEAS epigenetic state / master peak list
sampleproject
A sample project that exists for PyPUG's "Tutorial on Packaging and Distributing Projects"
snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
styles
Official repository for Citation Style Language (CSL) citation styles.
tfmodisco-lite-for-Fox
A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.
torchmetrics
Torchmetrics - Machine learning metrics for distributed, scalable PyTorch applications.
voice_to_speech
Transcribe an audio file into text, then summarize
yztxwd.github.io
A minimalist Jekyll theme for running a personal blog