seqcode's repositories
cross-species-domain-adaptation
Codebase for the domain adaptation (cross-species TF binding prediction) project.
sequnwinder
SeqUnwinder: a platform for deconvolving motifs associated with genomic labels
seqcode-core
SeqCode: Java code for the analysis of high-throughput sequencing data
cegr-galaxy
CEGR proprietary Galaxy components: pre-processing pipeline, ChIP-exo statistics tools, etc.
seqchromloader
Provide ready-to-use dataloader for deep learning models
Bichrom-Regression
Transcription factor binding strength prediction by deep neural network
cegr-tools
A set of utilities for use in the ChIP-exo flavor of Galaxy
Bichrom-GAT-Scripts
Repository for Bichrom-GAT scripts
Micro-C-Pipelines
This repository contains pipelines developed for processing Micro-C data
seqview-web-docker-public
Wrapper for existing genome browsers to search for files based on their metadata.
chromdisco
A fork of tfmodisco for chromatin interpretation
domain_adaptive_nn
Cross-species TF binding prediction
igv-webapp-embeddable
IGV Web App
mazzoni-zbtb-trackhub
Trackhub for Mazzoni lab mES ZBTB ChIP-seq tracks
shap-hypothetical
A game theoretic approach to explain the output of any machine learning model.
WaveNet
Yet another WaveNet implementation in PyTorch.
yep-trackhubs
UCSC genome browser trackhubs for YEP project