yufree

Miao YU's starred repositories

AutoGPT

AutoGPT is the vision of accessible AI for everyone, to use and to build on. Our mission is to provide the tools, so that you can focus on what matters.

Language:PythonMIT165118 1560 2424

Atlas

🚀 An open and lightweight modification to Windows, designed to optimize performance, privacy and usability.

Language:BatchfileGPL-3.012663 92 540

giscus

A comment system powered by GitHub Discussions. :octocat: :speech_balloon: :gem:

Language:TypeScriptMIT7778 26 314

zotero-gpt

GPT Meet Zotero.

Language:TypeScriptAGPL-3.04622 12 268

GeminiProChat

Minimal web UI for GeminiPro.

Language:TypeScriptMIT4210 31 109

plotnine

A Grammar of Graphics for Python

Language:PythonMIT3917 63 659

hexo-circle-of-friends

Python gets the friend's articles from hexo's friend-links

Language:PythonApache-2.0272 6 104

tinyplot

Lightweight extension of the base R graphics system

Language:RApache-2.0211 9 91

ThermoRawFileParser

Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono

Language:C#Apache-2.0174 24 137

alphapept

A modular, python-based framework for mass spectrometry. Powered by nbdev.

Language:HTMLApache-2.0166 11 143

r-base-shortcuts

⚡ Base R shortcuts: A collection of lesser-known but powerful idioms and coding patterns for writing concise and fast R code

156 4 7

SpectralEntropy

The similarity score for spectral comparison

Language:Jupyter NotebookApache-2.067 3 6

massformer

Tandem Mass Spectrum Prediction with Graph Transformers

Language:PythonBSD-2-Clause58 8 3

MsdialWorkbench

Universal workbench incorporating msdial, msfinder, and mrmprobs

Language:C#44 5 71

Cardinal

Mass spectrometry imaging toolbox

Language:R35 10 38

ms2query

MS2Query - machine learning assisted library querying of MS/MS spectra

Language:PythonApache-2.034 8 112

MSEntropy

Spectral entropy for mass spectrometry data.

Language:PythonApache-2.022 20

G-Aligner

G-Aligner: a graph-based feature alignment method for untargeted LC-MS-based metabolomics

Language:Python1600

MSIWarp

MAss spectra alignment tool for MSI data

Language:C++MIT16 3 12

HiTMaP

An R package of High-resolution Informatics Toolbox for Maldi-imaging Proteomics

Language:RGPL-3.01300

NP3_MS_Workflow

A Pipeline for LC-MS/MS Metabolomics Data Process and Analysis

Language:C++NOASSERTION1000

spectral_lib_matcher

A script based on the matchms library allowing to calculate spectral similarity measures between two mgf (usually a query file and a library file).

Language:PythonGPL-3.0800

RT-Transformer

Language:Python700

blink

Language:Jupyter NotebookNOASSERTION7 9 4

pIMZ

This framework allows to perform scRNA-seq-like analyses of imaging mass-spectrometry data. Check out the example jupyter-notebook in examples/

Language:Jupyter NotebookMIT7 3 5

MSIr

MSIr: Automatic Registration Service for Mass Spectrometry Imaging and Histology

Language:JavaScriptMIT5 30

IDSL.CSA

Composite Spectra Analysis

Language:RMIT5 2 2

weighting-spectral-similarity

Scripts and notebooks from Weighting low-intensity MS/MS ions and m/z frequency for spectral library annotation

Language:Jupyter NotebookBSD-3-Clause200

automsi

Language:PythonMIT100

SpaceM

Language:PythonApache-2.01 10