yufongpeng

Bend

A massively parallel, high-level programming language

visdom

A flexible tool for creating, organizing, and sharing visualizations of live, rich data. Supports Torch and Numpy.

neosync

Open source data anonymization and synthetic data orchestration for developers. Create high fidelity synthetic data and sync it across your environments.

openfold

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

AutoViz

Automatically Visualize any dataset, any size with a single line of code. Created by Ram Seshadri. Collaborators Welcome. Permission Granted upon Request.

RoseTTAFold-All-Atom

PrecompileTools.jl

Reduce time-to-first-execution of Julia code

ProgressBars.jl

A Julia clone of https://pypi.python.org/pypi/tqdm

BlazeSeq

WhereTraits.jl

traits for julia: dispatch on whatever you want using where syntax

massformer

Tandem Mass Spectrum Prediction with Graph Transformers

MALDIquant

Quantitative Analysis of Mass Spectrometry Data

FastClosures.jl

Faster closure variable capture

asari

asari, metabolomics data preprocessing

molql

Molecular Query Language

fiora

Fiora is an in silico fragmentation algorithm for small compounds that produces simulated tandem mass spectra (MS/MS). The framework employs a graph neural network to predict bond cleavages and fragment ion intensities via edge prediction. Additionally, Fiora can estimate retention times (RT) and collision cross sections (CCS) of the compounds.

NormAE

Batch effects removal method based on deep autoencoder and adversarial learning

DreaMS

DreaMS (Deep Representations Empowering the Annotation of Mass Spectra)

mona

MassBank of North America (MoNA) is a metadata-centric, auto-curating repository designed for efficient storage and querying of mass spectral records. The MoNA server is a set of Spring microservices written in Scala and Java utilizing MongoDB and ElasticSearch for data storage and RabbitMQ for messaging. The front-end is an Angular 10 web application that communicates with the server through REST endpoints.

JuliaInXL.jl

Julia interface to JuliaInXL addin

galaxytools

Set of Galaxy tool wrappers developed at RECETOX

GlyCombo

GlyCombo, a combinatorial glycan composition assignment tool

imputomics

Met4DX

julia_mzML_imzML

SelfOrganizingMaps.jl

LipidSigR

R package for Analyzing Lipidomic Datasets

DefaultFields.jl

A package to declare abstract types with default fields/values in Julia.

FlexibleTransferModels

LEOPARD

Missing view completion for multi-timepoint omics data via representation disentanglement and temporal knowledge transfer