RECETOX / galaxytools

Set of Galaxy tool wrappers developed at RECETOX

RECETOX/galaxytools Issues

high-res peak overwriting tool
Updated 5 months ago
Add RIAssigner read RI from comments tool
Updated 5 months ago
Implement QCxMS Galaxy tools
Updated 5 months ago
Handle string sanitzing in matchms add key tool
Closed 6 months ago1
Disable key conversion in data handling matchms tools
Closed 6 months ago1
recetox-msfinder version update
Closed 6 months ago
Update matchms filtering tool to also validate SMILES and InChI with require filters
Closed 6 months ago
Add require precursor_mz filter to matchms filtering
Closed 7 months ago
matchms merge/subset tool import issue
Closed 7 months ago1
matchms scores formatter numpy import issues
Closed 7 months ago3
MFAssignR: Wrapper for isotope filtering function
Updated 7 months ago
Add `derive_precursor_mz_from_parent_mass` to matchms filtering
Closed 7 months ago
Galaxy wrapper for Gibbs sampler to estimate posterior probabilities
Updated 7 months ago1
Wrapper for ComputeBio
Updated 7 months ago
Galaxy wrapper for ipaPy2
Updated 7 months ago
Wrapper for map isotope patterns
Updated 7 months ago1
MFAssignR: Galaxy wrapper for the recalibration
Updated 7 months ago
MFAssignR: Galaxy wrapper for formula assignment
Updated 7 months ago
wrapper for MS2 annotation
Updated 7 months ago
Wrapper for MS1 annotation
Updated 7 months ago
Galaxy module for including pathways in the scoring
Closed 7 months ago
Galaxy wrapper which converts an MSP database to a csv used in ipapy2 as MS2 database, so a spectratable
Updated 7 months ago
Check interoperability of ipapy2 adduct table and database and recetox-xmsannotator
Updated 7 months ago
Wrapper for clustering step which accepts recetox-aplcms and XCMS output
Updated 7 months ago1
MFAssignR: Wrapper for noise estimation module
Updated 7 months ago
add `matchms remove key` tool
Closed 8 months ago
Error running Remove coordination complexes tool
Closed 8 months ago2
Update recetox-msfinder to version that writes log files
Closed 8 months ago
Galaxy tool to create an alkane series file?
Updated 8 months ago1
matchms_formatter only works when 'compound_name' is present
Updated 8 months ago4
Extract groups of compounds which are derivatization products of one another.
Updated 8 months ago
Split spectral library according to derivatization using SMARTS tool
Updated 8 months ago
Find a tool which enables filtering coordination complexes and mixtures from a list of SMILES
Closed 8 months ago1
Change all output table types to tabular unless they are parquet
Updated 8 months ago
matchms networking Identifier key is not an optional variable
Updated 8 months ago
Implement tool to merge metadata excel sheet into MSP by joining on a specified column/metadata key
Closed 8 months ago2
matchms spectral library subsetting tool
Closed 8 months ago
Update matchms suite to 0.24.0
Closed 8 months ago
matchms networking: fix compatability with newer matchms tools
Closed 8 months ago
Add CID support to QCxMS
Updated 9 months ago
Implement an interactive tool or visualization to view molecular structures in 3D
Updated 9 months ago
Implement tool to generate an isotopic pattern library
Updated 9 months ago
matchms metadata match memory allocation
Updated 9 months ago1
Implement wrapper for PeakPantheR
Updated 9 months ago
Implement a matchms export peaklist tool
Updated 9 months ago
matchms: add option to filter 0 scores or not
Updated 9 months ago
Add EDAM identifiers to MSFinder
Closed 9 months ago
Add EDAM identifiers to retip
Closed 9 months ago
matchms: update to 0.23.1
Closed 9 months ago
deploy to toolshed
Closed 9 months ago