YuboWang1994's starred repositories
rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
genomeGTFtools
convert various features into a GFF-like file for use in genome browsers
TideHunter
TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
AlleleFinder
AlleleFinder is a tool for identifying allele genes from polyploid genome.
Plant_Annotation_TEs
Methods and recipes for Plant Genome Annotation - Transposable Elements
chicken-T2T
Scripts that used in our chicken T2T manuscript.
TEorthology
Script to help assessing the evolutionary history of a TE family
bovine_pangenome_graph
Integrate multiple assemblies into a pangenome graph
MUMmerSNP2VCF_script
Align haplotype genomes (bacterial or some viruses) using MUMmer to obtain SNPs/InDels information and convert to VCF format
Yak_adaptation
Detection of SV in yak and cattle and single-cell transcriptome analysis of lung tissue
Monococcum_genome_scripts
In this repository some custom scripts used for the Einkorn genome publication are deposited
tandem_repeats
Compagnon repository of "MEGASATELLITE FORMATION AND EVOLUTION IN VERTEBRATES" article
SaltStressTranscriptome
Evolutionary changes in gene expression during divergence of diploid and polyploid cotton