SunPengChuan / wgdi

WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes

https://wgdi.readthedocs.io/en/latest/

SunPengChuan/wgdi Issues

low kernal density for a species pair
Updated a month ago1
Retain (-r) - TypeError: 'Axes' object is not subscriptable
Updated 4 months ago1
Wgd events of multi-genomes
Closed 2 years ago17
关于将现存物种映射到祖先物种并作ks图的问题
Closed 6 months ago2
The number of gene pairs in the KS result file is not equal to the number of gene pairs in collinearity file
Closed 6 months ago2
Problem of ancestral_karyotype_repertoire
Closed 8 months ago2
Problem of preparing the data
Closed 9 months ago7
issue with deal_gff.py
Closed 9 months ago2
Error in creating dotplot, ValueError: cannot reindex on an axis with duplicate labels
Closed 9 months ago6
PeaksFit do not show two peaks
Closed 9 months ago5
Karyotype Evolution
Closed 9 months ago1
error with -kf function in wgdi used to make ks figure
Closed 9 months ago6
KeyError: "None of [Int64Index ... in wgdi -c
Updated 10 months ago7
We prepared three input files according to the example, but an error occurred after the last step "wgdi -d total.cof" was entered
Closed a year ago10
Why polyploidy classification without a underline (_)
Closed a year ago1
关于祖先核型构建的几个疑问
Updated a year ago2
ERROR: inconsistency between the following pep and nuc seqs
Closed 3 years ago5
Legend error for "-kf" results
Closed a year ago2
No "-bi" result file generation
Closed a year ago4
Strange collinearity results compared to MCscanX.
Closed a year ago2
Strange Ks distribution analysis results
Closed a year ago10
helllo friend ,now the wgdi had eroror, it shows ValueError: cannot reindex on an axis with duplicate labels
Closed a year ago6
_tkinter.TclError: unknown color name "white" I don't know how to solve this error
Closed a year ago3
Getting problem at karyotype mapping step
Closed a year ago10
_tkinter.TclError: couldn't connect to display "localhost:21.0"
Closed a year ago2
wgdi -icl error
Closed 2 years ago6
deal_gff.py improvement
Updated 2 years ago1
Preparation of input file
Closed 2 years ago2
Ancestor is unknown
Updated 2 years ago11
ks result is empty
Closed 2 years ago5
Error in Dotplot stage
Closed 2 years ago14
example data
Closed 2 years ago4
wgdi can not recognize the PATH of mafft
Closed 2 years ago1
wgdi -icl error
Closed 2 years ago1
Is there an example to explain how to use wgdi to get cross-species Ks plot?
Closed 2 years ago1
wgdi -kf legend
Closed 3 years ago3
sep="\n" cause ValueError?
Closed 3 years ago5
Error in calculate Ks
Closed 3 years ago9
Error when run wgdi alignment
Closed 3 years ago2
separate Gaussian Fitting for two or more peaks
Closed 3 years ago5
wgdi -conf ./conf.ini error
Closed 3 years ago2
ksfigure becomes color-filled blocks instead of lines
Closed 3 years ago2
wgdi -d get Segmentation fault (core dumped)
Closed 3 years ago2
KeyError: 'evm.model.Chr11.615.evm.model.Chr11.616'
Closed 3 years ago1
how much time ’wgdi -icl total.conf‘ need for vvi161s？
Closed 3 years ago4
UnboundLocalError: local variable 'group' referenced before assignment
Closed 3 years ago3
ZeroDivisionError: division by zero and ancestor_location
Closed 4 years ago1
IndexError: index 2 is out of bounds for axis 0 with size 0 (ksfigure.conf)
Closed 4 years ago6
How to install and run wgdi
Closed 4 years ago1
师哥
Closed 4 years ago