ytabatabaee / TF_Binding_Prediction

Predicting transcription factor-DNA binding from sequence

TF-DNA Binding Prediction

Predicting transcription factor-DNA binding from sequence

Content

This repository contains the following files:

• notebooks:
  • TF_Binding_Prediction.ipynb: Implementation of the per-TF model and all results and comparisons between methods
  • Baseline.ipynb: Implementation and analysis for the baseline method
  • Multi_TF(1).ipynb: Implementation of the multi-TF model-1
  • Multi_TF(3).ipynb: Implementation of the multi-TF model-2
• data: Data containing binding strenght of TFs to segments of DNA sequence
• results: Classification statistics for all methods and all TFs as well as extra figures and plots for correlation analysis, etc