Facing error while creating multi compare plot

Question

Facing error while creating multi compare plot

deppworld opened this issue 2 years ago · comments

Hi, I was testing a few lncRNA in breast cancer. I am getting individual plots easily but facing error while I am creating a combined plot of multiple lncRNA. Error is following:

prad <- pre_multiCompare(files = list("ENST00000430027.3_BRCA_cor.txt",

                                  "ENST00000494582.1_BRCA_cor.txt",

                                  "ENST00000423211.1_BRCA_cor.txt"), compare = "lncRNA")

plot_multiCompare(prad)
Error in grid.Call.graphics(C_setviewport, vp, TRUE) :
non-finite location and/or size for viewport
In addition: Warning message:
Removed 1 rows containing missing values (geom_point).

ynren1020 · Answer 1 · Tue May 03 2022 21:59:55 GMT+0800 (China Standard Time)

Hi @deppworld,

Do you mind to share your output files (ENST00000430027.3_BRCA_cor.txt,ENST00000494582.1_BRCA_cor.txt,ENST00000423211.1_BRCA_cor.txt) with me? If yes, you can send them to renxx275@umn.edu.

Thanks,

Yanan

ynren1020 · Answer 2 · Wed May 04 2022 00:13:51 GMT+0800 (China Standard Time)

Hi @deppworld,

I sent you the results I produced. Could you please take a closer look at your file "ENST00000430027.3_BRCA_cor.txt". The last row of the results is not complete, it should have 8 columns rather than 5 columns. This line will cause the missing value in the pre_multiCompare output which leads to the error you have met.

Yanan

Deepak Verma · Answer 3 · Wed May 04 2022 01:07:12 GMT+0800 (China Standard Time)

Hi @ynren1020
Thanks for your reply. I will check why I am getting missing values.

Deepak