Yue Zhang's repositories
uncurl_python
UNCURL is a tool for single cell RNA-seq data analysis.
uncurl_analysis
analysis tools for use with uncurl
biobert
BioBERT: a pre-trained biomedical language representation model
combat.py
python / numpy / pandas / patsy version of ComBat for removing batch effects.
gssnng
Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.
Kalman-and-Bayesian-Filters-in-Python
Kalman Filter book using Jupyter Notebook. Focuses on building intuition and experience, not formal proofs. Includes Kalman filters,extended Kalman filters, unscented Kalman filters, particle filters, and more. All exercises include solutions.
kg_feature_engineering
Using knowledge graphs for feature engineering
missingpy
Missing Data Imputation for Python
mnnpy
An implementation of MNN (Mutual Nearest Neighbors) correct in python.
pairwiseMKL
pairwiseMKL package
POT
POT : Python Optimal Transport