Ying's repositories
Single-Cell-Open-Problems
Formalizing and benchmarking open problems in single-cell genomics
Pipeline-of-transcriptome
The pipeline of transcriptome analysis
beautiful-jekyll
✨ Build a beautiful and simple website in literally minutes. Demo at https://beautifuljekyll.com
covid19_respiratory_microbiome
Code accompanying the manuscript "Clinical practices underlie COVID-19 patient respiratory microbiome composition and its interactions with the host"
drop_it_like_its_hot_r
Compilation of R heatmap functions.
IgDiscover
Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads
luca
Single-cell Lung Cancer Atlas with 1.2M cells
MachineLearningFromScratch
Implementation of a few machine learning algorithms. From the ebook by Daniel Friedman.
scRNA_NB_comparison
Scripts to reproduce the analyses in the paper "Comparison and evaluation of statistical error models for scRNA-seq"
scRNAseq-analysis-notes
scRNAseq analysis notes from Ming Tang
shiny_cell_browser
Shiny browser for single cell RNAseq data
single-cell_sib_scilifelab_2021
SciLifeLab SIB Summer School for Advanced topics in Single Cell Omics. Site: https://nbisweden.github.io/single-cell_sib_scilifelab_2021/
TCR-BCR-seq-analysis
T/B cell receptor sequencing analysis notes
Tumor-Immune-Cell-Atlas
Code repository for the Tumor Immune Cell Atlas (TICA) project
workshop-r
Workshop • R Programming Foundations for Life Scientists • 5 days
workshop-RNAseq
Workshop • Analysis of RNA-seq data
workshop_omics_integration
Workshop in omics integration and systems biology