Ying's repositories
customized-upset-plots
Make customized upset plots: from raw data to plots
adapters
Adapters for trimming
bioinfscripts
Bioinformatics scripts produced over the course of my work. Now maintained on GitLab.
examples
A comparison of the dimensionality reduction results using t-SNE, UMAP, PCA, and TriMap
excelerate-scRNAseq
Single RNA-seq data analysis with R (Finland, May, 2019)
GEOquery-scripts
Scripts using GEOquery package to fetch expression matrices and phenotypic data associated with GSE datasets
intermediate
small R utility for mediation analysis
ISMB2018_SingleCellTranscriptomeTutorial
See: https://www.iscb.org/ismb2018/3511#am1
R-for-Data-Science
R for data science
r-intro
Cambridge Basic R Course
rethinking-Examples
Examples from rethinking book coded in Stan.
rethinking-Rpackage
Statistical Rethinking course and book package
RNASeq-explorer
Shiny Application for Exploring RNASeq results created using DESeq2
SC3-paper-figures
Scripts to recreate figures from the SC3 paper
SCT-MoA
Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"
sed-and-awk
A online presentation for sed & awk
single-cell_sib_scilifelab
SIB/Scilifelab autumn school in single cell omics 2019.
Statistical-Rethinking
An interactive online reading of McElreath's Statistical Rethinking
umis
Tools for processing UMI RNA-tag data
wallpapers
A lot of people ask for the wallpapers/backgrounds in my videos or that I use as decor. Here they all are!