Hetmech is a project to extract mechanistic connections between nodes in hetnets. The project aims to identify the relevant network connections between a set of query nodes. The method is designed to operate on hetnets (networks with multiple node or relationship types).
Note: the hetmech python package has been renamed to hetmatpy and relocated to hetio/hetmatpy.
This repository is now used as a historical archive, as well as a dataset storage and method prototyping repository.
This project is still under development: use with caution.
This repository uses conda to manage its environment as specified in environment.yml.
Install the environment with:
conda env create --file=environment.ymlThen use conda activate hetmech and conda deactivate to activate or deactivate the environment.
This work is supported through a research collaboration with Pfizer Worldwide Research and Development. This work is funded in part by the Gordon and Betty Moore Foundation’s Data-Driven Discovery Initiative through Grants GBMF4552 to Casey Greene and GBMF4560 to Blair Sullivan.