yfukasawa

bcbio-nextgen

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

Flye

De novo assembler for single molecule sequencing reads using repeat graphs

hifiasm

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

alphamissense

Bio.jl

[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia

rust-mdbg

minimizer-space de Bruijn graphs (mdBG) for whole genome assembly

WFA2-lib

WFA-lib: Wavefront alignment algorithm library v2

herro

HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of >= 10 kbps is recommended).

scout

VCF visualization interface

AnchorWave

sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation

kGCN

A graph-based deep learning framework for life science

assembly-stats

Get assembly statistics from FASTA and FASTQ files

trgt

Tandem repeat genotyping and visualization from PacBio HiFi data

HiPhase

Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads

mm2-fast

A versatile pairwise aligner for genomic and spliced nucleotide sequences

pb-human-wgs-workflow-snakemake

Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads

babel

Deep learning model for single-cell inference of multi-omic profiles from a single input modality.

Kmer-based-Subgenome-Mapping

mitofy

Fork of mitofy for linux web interface

MitoFates

Prediction of mitochondrial targeting sequences and their cleavage sites