yfu

tools

Some tools

yfu.github.io

acpp

Accelerated C++

bam2x

extract information from bam (sequence alignment) files and generate tables for further analysis.

bootstrap

The most popular front-end framework for developing responsive, mobile first projects on the web.

cabbagelooper

Cabbage looper

canu

A single molecule sequence assembler for genomes large and small.

cprogramexam

Automatically exported from code.google.com/p/cprogramexam

datamash

mirror of GNU Datamash

dotemacs

My .emacs and .emacs.d

galaxy-pipelines

Galaxy pipelines

iTerm2

iTerm2 is a terminal emulator for Mac OS X that does amazing things.

lagan-fork

a fork of the Michael Brudno's LAGAN

minimal-mistakes

:triangular_ruler: Jekyll theme for building a personal site, blog, project documentation, or portfolio.

mitcr

MiTCR is a software for processing T-cell repertoire sequencing data

piPipes

piRNA pipeline collection developed in the Zamore Lab and ZLab in UMass Med School

presentations

Bring Your Own Bioinformatics

pyfaidx

Efficient pythonic random access to fasta subsequences

pypeFLOW

a simple lightweight workflow engine for data analysis scripting

RNASeqReadSimulator

RNASeqReadSimulator is a simple tool to generate simulated single-end or paired-end RNA-Seq reads.

sensible-side-buttons

A macOS menu bar app that enables system-wide navigation functionality for the side buttons on third-party mice.

sixaxispairer

A tool for viewing and setting the bluetooth address a sixaxis controller is currently paired with.

SPRINT

SNP-free RNA editing Identification Toolkit

SwiftPlayground

terminus

The Pantheon CLI — a standalone utility for performing operations on the Pantheon Platform

ThinkStats2

Text and supporting code for Think Stats, 2nd Edition

tree

UMI-tools

Tools for handling Unique Molecular Identifiers in NGS data sets

umitools

A toolset for handling sequencing data with unique molecular identifiers (UMIs)

yfu-file

Automatically exported from code.google.com/p/yfu-file