Stevie Yeh's repositories
scCATCH_performance_comparison
The source code and results of performance comparison on the detail of the process among scCATCH, CellAssign, Garnett, SingleR, scMap and CHETAH, and CellMatch database
scATAC-pro
A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data
CATALYST
Cytometry dATa anALYsis Tools
DoubletFinder
R package for detecting doublets in single-cell RNA sequencing data
SQANTI2
Private repo for Liz's modified SQANTI
SnapATAC
Analysis Pipeline for Single Cell ATAC-seq
pbbioconda
PacBio Secondary Analysis Tools on Bioconda
MPAL-Single-Cell-2019
Publication Page for MPAL Paper 2019
pyGenomeTracks
python module to plot beautiful and highly customizable genome browser tracks
ComBat-seq
Batch effect adjustment based on negative binomial regression for RNA sequencing count data
Genrich
Detecting sites of genomic enrichment
model-zoo
Please do not feed the models
Cluster_SingleCell_CellType
Use the method to auto classify cell type in single cell
dgl
Python package built to ease deep learning on graph, on top of existing DL frameworks.
scrublet
Detect doublets in single-cell RNA-seq data
TheAlgorithms-Python
All Algorithms implemented in Python
scATAC_DeepLearning
Single-cell ATAC-seq analysis via Latent feature Extraction
Scanpy_LightGBM_10X
Use the Scanpy read 10X dataset and LightGBM run the model
Class-balanced-loss-pytorch
Pytorch implementation of the paper "Class-Balanced Loss Based on Effective Number of Samples"
DeepLearning
深度学习入门教程&&优秀文章&&Deep Learning Tutorial
Dive-into-DL-PyTorch
本项目将《动手学深度学习》（Dive into Deep Learning）原书中的MXNet代码实现改为PyTorch实现。
The-Elements-of-Statistical-Learning-Python-Notebooks
A series of Python Jupyter notebooks that help you better understand "The Elements of Statistical Learning" book
PyTorch-GAN
PyTorch implementations of Generative Adversarial Networks.
awesome-automl-papers
A curated list of automated machine learning papers, articles, tutorials, slides and projects
Bio-AlignAnalysis
Bio Align Anlysis(scRNA,wes etc)
10x-scATAC-2019
Code Repository for Satpathy Granja et al 2019