Yax Che's repositories
JPackageScriptFX
A tutorial project featuring a build script (Mac, Windows) for JavaFX applications based on the new jpackage tool.
PGR
A Silver Standard Corpus of Human Phenotype-Gene Relations
datasketch
MinHash, LSH, LSH Forest, Weighted MinHash, HyperLogLog, HyperLogLog++, LSH Ensemble
cath-tools
Protein structure comparison tools such as SSAP and SNAP
hiitpi
A workout trainer Dash/Flask app that helps track your HIIT workouts by analyzing real-time video streaming from your sweet Pi using machine learning and Edge TPU..
biograkn
BioGrakn Knowledge Graph
gnina
A deep learning framework for molecular docking
Santulator
🎁 A Secret Santa draw generator that creates beautiful PDFs for each participant
modeldb
Open Source ML Model Versioning, Metadata, and Experiment Management
electra
ELECTRA: Pre-training Text Encoders as Discriminators Rather Than Generators
pywren
Teraflops and microservices
pennai
the Penn AI engine.
grobid
A machine learning software for extracting information from scholarly documents
TextBrewer
A PyTorch-based knowledge distillation toolkit for natural language processing
dimensions-api-lab
Reusable code samples for the Dimensions Analytics API
delft
a Deep Learning Framework for Text
gatk
Official code repository for GATK versions 4 and up
genepattern-server
The GenePattern Server web application
BioSentVec
BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences
fastapi
FastAPI framework, high performance, easy to learn, fast to code, ready for production
JangoWave
Django Query App for Accumulo
biomedicus3
BioMedICUS: A biomedical and clinical NLP engine.
tpot
A Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.
deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
datahub
A Generalized Metadata Search & Discovery Tool
mtap
MTAP: A framework for distributed text analysis using gRPC and microservices-based architecture.
kb
KnowBert -- Knowledge Enhanced Contextual Word Representations
amundsen
Amundsen is a metadata driven application for improving the productivity of data analysts, data scientists and engineers when interacting with data.