YaqiangCao

d2l-en

Interactive deep learning book with multi-framework code, math, and discussions. Adopted at 500 universities from 70 countries including Stanford, MIT, Harvard, and Cambridge.

ddia

《Designing Data-Intensive Application》DDIA中文翻译

pyscript

Try PyScript: https://pyscript.com Examples: https://tinyurl.com/pyscript-examples Community: https://discord.gg/HxvBtukrg2

codon

A high-performance, zero-overhead, extensible Python compiler using LLVM

alphafold

Open source code for AlphaFold.

cleanlab

The standard data-centric AI package for data quality and machine learning with messy, real-world data and labels.

nicegui

Create web-based user interfaces with Python. The nice way.

tutorials

PyTorch tutorials.

hugo-blox-builder

🚨 GROW YOUR AUDIENCE WITH HUGOBLOX! 🚀 HugoBlox is an easy, fast no-code website builder for researchers, entrepreneurs, data scientists, and developers. Build stunning sites in minutes. 适合研究人员、企业家、数据科学家和开发者的简单快速无代码网站构建器。用拖放功能、可定制模板和内置SEO工具快速创建精美网站！

mamba

The Fast Cross-Platform Package Manager

mesh-transformer-jax

Model parallel transformers in JAX and Haiku

BioGPT

PyTorch-BigGraph

Generate embeddings from large-scale graph-structured data.

vispy

Main repository for Vispy

trimesh

Python library for loading and using triangular meshes.

STAR

RNA-seq aligner

tsne-cuda

GPU Accelerated t-SNE for CUDA with Python bindings

polyscope

A C++ & Python viewer for 3D data like meshes and point clouds

free-sidecar

Enable Sidecar on Unsupported iPads and Macs running iPadOS 13 and macOS Catalina

CHM13

The complete sequence of a human genome

dynamo-release

Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses

igv-reports

Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.

celltypist

A tool for semi-automatic cell type classification

chromap

Fast alignment and preprocessing of chromatin profiles

PaperScraper

A web scraping tool to systematically extract the text of scientific papers and corresponding metadata from university accessible journals.

paperscraper

Tools to scrape publication metadata from pubmed, arxiv, medrxiv and chemrxiv.

BAMscale

BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy visualization of commonly used DNA-seq capture based methods.

cLoops2

Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.

plot2DO

A tool to assess the quality and distribution of genomic data

yaqiangcao.github.io

Yaqiang Cao Homepage