pikachu's repositories
shadowsocks-qt5
A cross-platform shadowsocks GUI client
graphtime
Encoding of transition probabilities with undirected graphical models
simpatico
Molecular dynamics and Monte Carlo simulation package for polymeric and molecular liquids
feasst
The Free Energy and Advanced Sampling Simulation Toolkit (FEASST) is a free, open-source, modular program to conduct molecular and particle-based simulations with flat-histogram Monte Carlo and molecular dynamics methods.
msmrd
MSMs coupled with reaction-diffusion dynamics
pyplot-fortran
For generating plots from Fortran using Python's matplotlib.pyplot 📈
pscf
Polymer self-consistent field theory
KymoKnot
A software package to identify and locate knots in polymers
Paddle
PArallel Distributed Deep LEarning
cgcnn
Crystal graph convolutional neural networks for predicting material properties.
handson-ml
A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in python using Scikit-Learn and TensorFlow.
DynamO
An event-driven particle simulator and visualisation code. Please see the website below for more information.
algorithms-cuda
parallel algorithm based on cuda
BMSP2017
Demonstration codes for the Replica-Exchange Wang-Landau sampling tutorial lectures
examples
Fortran and Python examples to accompany the book "Computer Simulation of Liquids" by Michael P. Allen and Dominic J. Tildesley (2nd edition, Oxford University Press, 2017). Use the "Clone or download" button, or follow the "...releases" link below.
pywonderland
Render beautiful images or animate interesting algorithms in mathematics with Python.
neural-style
Neural style in TensorFlow! :art:
terminal_game_center
Some typical game implement in a terminal.
NetLogo
turtles, patches, and links for kids, teachers, and scientists
GPUMD
Graphics Processing Units Molecular Dynamics
Probabilistic-Programming-and-Bayesian-Methods-for-Hackers
aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)
nglview
IPython widget to interactively view molecular structures and trajectories
pytorch-tutorial
PyTorch Tutorial for Deep Learning Researchers
sonnet
TensorFlow-based neural network library
spider-course-1
Spider course for open and first season