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y1zhou / metabolike

Identifying reprogrammed metabolic routes given omics data.

Home Page:https://metabolike.readthedocs.io/

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bioinformaticsgraph-databasemetabolic-pathways

Welcome to metabolike đź‘‹

Metabolike logo

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An alternative way to explore metabolic networks.

Metabolike lets you transform SBML metabolic models into queryable, interactive graphs.

Installation

pip install -U metabolike

For more details, please visit the documentation site.

Feature highlights

  • Parser that can read any valid SBML model and write relevant entities into a graph database.
  • Special support for BRENDA and BioCyc data files.
  • A Streamlit app for novel metabolic route detection with omics-data integration.

License

Metabolike is completely free and open-source and licensed under the GPL-3.0 license.

About

Identifying reprogrammed metabolic routes given omics data.

https://metabolike.readthedocs.io/

bioinformaticsgraph-databasemetabolic-pathways

License:GNU General Public License v3.0

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