xiucz

GitHub-Chinese-Top-Charts

:cn: GitHub中文排行榜，各语言分设「软件 | 资料」榜单，精准定位中文好项目。各取所需，高效学习。

my-tv

我的电视 电视直播软件，安装即可使用

clashfree

clash节点、免费clash节点、免费节点、免费梯子、clash科学上网、clash翻墙、clash订阅链接、clash for Windows、clash教程、免费公益节点、最新clash免费节点订阅地址、clash免费节点每日更新

Qbot

[🔥updating ...] AI 自动量化交易机器人(完全本地部署) AI-powered Quantitative Investment Research Platform. 📃 online docs: https://ufund-me.github.io/Qbot ✨ :news: qbot-mini: https://github.com/Charmve/iQuant

public-image-mirror

很多镜像都在国外。比如 gcr 。国内下载很慢，需要加速。致力于提供连接全世界的稳定可靠安全的容器镜像服务。

BaiduPCS-Go

iikira/BaiduPCS-Go原版基础上集成了分享链接/秒传链接转存功能

files

TVBox开源版,盒子软件分享

finplot

Performant and effortless finance plotting for Python

ngs-bits

Short-read sequencing tools

emg-viral-pipeline

VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies

XAI-for-bioinformatics

Explainable AI for Bioinformatics

nanomonsv

SV detection tool for nanopore sequence reads

mavis

Merging, Annotation, Validation, and Illustration of Structural variants

TCGAplot

A number of functions were generated to perform pan-cancer DEG analysis, correlation analysis between gene expression and TMB, MSI, TIME, and promoter methylation. Methods for visualization were provided in order to easily perform integrative pan-cancer multi-omics analysis.

bash-libraries

A set of useful Bash libraries

pipeline-resources

Bioinformatics Pipeline and Visualization resources

Spectre

Copy number caller for long read data including SNV utilization

Cyrius

A tool to genotype CYP2D6 with WGS data

coding_exercise_TCGA_infiltration

coding exercise using TCGA immune infiltration data

TCGA_analysis

fgsv

Tools to gather evidence for structural variation via breakpoint detection.

BedAnno

Annotate genomics variations of hg19 by using a BED format database, which construct from NCBI annotation release 104

cancereffectsizeR

cancereffectsizeR: an R package to measure the cancer effect size of somatic mutations

dnarrange

IMSindel

IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split read analysis

slurm-tools

Slurm CLI tools used on CARC HPC clusters

StrainZip

Unified co-assembly and pseudo-alignment

Gviz_multiAlignments

R script for multiple BAM alignments viewing using Gviz (bioconductor package)

genalice-icr96

Materials & Methods for CNV calling with Genalice software against a benchmark dataset

SV_benchmark_PacBio_HiFi

Structural variant benchmark using PacBio HiFi reads