Chunlei's starred repositories
SNAF
Splicing Neo Antigen Finder (SNAF) is an easy-to-use Python package to identify splicing-derived tumor neoantigens from RNA sequencing data, it further leverages both deep learning and hierarchical Bayesian models to prioritize certain candidates for experimental validation
cellDancer
Predict RNA velocity through deep learning
TADsplimer
TADsplimer
wdl_pipelines
WDL pipelines to be run on cromwell (https://github.com/broadinstitute/cromwell)
chip-seq-pipeline2
ENCODE ChIP-seq pipeline
pyflow-ChIPseq
a snakemake pipeline to process ChIP-seq files from GEO or in-house