Giters
xiaoli-dong
/
metaerg
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Stargazers:
42
Watchers:
4
Issues:
47
Forks:
18
xiaoli-dong/metaerg Issues
Error on the docker run
Updated
7 months ago
unable to open database file at /NGStools/metaerg/bin/output_reports.pl line 58
Updated
2 years ago
Update the docker image in docker hub
Updated
3 years ago
Unknown option -d in output_reports.pl
Updated
a year ago
Comments count
1
Downloading pre-built databases halted
Updated
3 years ago
MetaErg with default options does not running
Updated
3 years ago
`setup_db.pl` not finding the SILVA database
Closed
3 years ago
Comments count
1
Cannot download database from Calgary site
Closed
3 years ago
Comments count
2
Output_reports.pl - Time::Piece not working, resulting in error?
Updated
2 years ago
Comments count
1
Error in the rRNAFinder.pl step
Updated
2 years ago
Comments count
3
# Failing to download go_daily-termdb.rdf-xml.gz
Updated
3 years ago
setup_db.pl failing to download SSU data
Updated
3 years ago
Merging output files for multiple samples?
Closed
3 years ago
Update Ubuntu version in Dockerfile
Updated
4 years ago
MinPath.py error
Updated
4 years ago
Comments count
2
Error in rRNAFinder.pl
Updated
4 years ago
Can't call method "length" on an undefined value at /home/metaerg/bin/output_reports.pl line 316.
Updated
3 years ago
Comments count
3
error slice bounds out of range [:105] with capacity 27
Updated
4 years ago
Annotation of metatranscriptome assembly
Updated
4 years ago
Running Docker impossible
Updated
4 years ago
Comments count
1
abundance calculation
Updated
4 years ago
Is it possible to use metaerg with databases other than the ones included?
Updated
4 years ago
Run metaerg on existing gene prediction
Updated
4 years ago
Error of run using docker
Updated
4 years ago
.json files aren't JSON
Updated
4 years ago
issues with KEGG annotations and KO mapping
Updated
4 years ago
Comments count
6
Current downloadable reference archive is missing the hmm/rna folder
Updated
4 years ago
Error when creating data/all.gff file
Updated
2 years ago
How is the abundance calculated for each functional profile?
Updated
4 years ago
Comments count
5
more than --cpus [N] used when calling metaerg.pl
Closed
4 years ago
Comments count
1
can't load critical perl modules - MetaErg on KBase?
Updated
4 years ago
Comments count
1
DBD::SQLite::st execute failed: disk I/O error
Updated
4 years ago
Comments count
1
Best practices when rerunning after job fails
Updated
4 years ago
Comments count
5
No content in output html reports?
Closed
4 years ago
Comments count
9
Minimal info needed in depth file
Closed
5 years ago
Comments count
4
Normalization step
Updated
4 years ago
Comments count
3
Install via conda
Updated
5 years ago
Comments count
1
unable to open database file
Updated
4 years ago
Comments count
9
master.tsv.txt has no entries for kegg and metacyc pathway
Updated
5 years ago
Comments count
7
Bio::Root::Exception: mdepth_cols does not exist
Closed
5 years ago
Comments count
5
utility scripts: "Inappropriate ioctl for device" and "unbinned" bin IDs
Updated
5 years ago
panic: runtime error: slice bounds out of range
Updated
5 years ago
Comments count
3
Cannot install SWISS::Entry; and SWISS::KW; perl modules
Updated
5 years ago
Comments count
1
vestigial -d option in pipeline causing error
Updated
4 years ago
Comments count
12
master.tsv
Updated
5 years ago
Comments count
1
Error in docker docs ? Also perl error ?
Updated
5 years ago
Comments count
2
Diamond not running from docker
Updated
3 years ago
Comments count
33