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Xiaoli Dong (xiaoli-dong)

xiaoli-dong

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Company:Public Health Laboratory - South, Alberta Precision Laboratories

Location:Calgary

Home Page:http://people.ucalgary.ca/~xdong

Twitter:@xiaoliidong

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Xiaoli Dong's repositories

metaerg

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metagenomics_crash_course

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rRNAFinder

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pathogenseq

Pathogen whole genome sequence (WGS) data analysis pipeline

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nextflow_tutorial

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pcrValidator

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docker-metaerg

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ebs

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ebs-backend

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ebs-frontend

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ebs-mongodb

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gene2phylogeny

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mag

Assembly and binning of metagenomes

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magph

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magpie

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metaamp

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monkeypox-nf

A monkeypox virus (MPXV) assembly pipeline using Nextflow for host-removal, reference-based assembly, and generation of sequence quality metrics for Illumina paired-end data using a shotgun metagenomic sequencing approach.

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nanopore-16srrna

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nf-flu

Influenza genome analysis Nextflow workflow

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nf-fluAB

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nf-nanopore-ssu

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nf-qc

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nf-tb

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pathogen

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sequenoscope

A set of tools for working with adaptive sampling and comparison between treatment and control read sets

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TBProfiler

Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data

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viralrecon

Assembly and intrahost/low-frequency variant calling for viral samples

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