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Bioinfor_researchers_atlas

ENIGMA

A fast and accurate deconvolution algorithm based on regularized matrix completion algorithm (ENIGMA)

ICAnet

Independent Component Analysis decipher functional modules for better cell clustering and annotation

NetID_package

A scalable method to infer fate specific gene regulatory network from single cell gene expression data

LowpassingHM

Improve your single cell gene expression heatmap with one function

LSI_for_batch_effect_correction

ENIGMA_test

test ENIGMA installation

MouseGerm_DDX43

All datasets include analyzed scRNA-seq, peak files called from eCLIP-seq datasets, and spliced/unspliced readouts of single cell. And codes for reproducing main results of study

NetID

The pipeline for benchmarking NetID with different imputation methods on any UMI-based scRNA-seq datasets

RegVelo

cellrank

CellRank for directed single-cell fate mapping

CIDER

R package CIDER: Meta-Clustering for Single-Cell Data Integration and Evaluation

ENIGMA_0.1

This repo is for testing the new version of ENIGMA

ENIGMA_analysis

ENIGMA_docs

ENIGMA_Documentation

ENIGMA_Documentation_1

ENIGMA_test2

test the newest package of ENIGMA

graphlayouts

new layout algorithms for network visualizations in R

motifmatchr

Fast motif matching in R

PIDC_bug

A bug of PIDC algorithm

pyENIGMA

a python based implementation of ENIGMA

scarches

Reference mapping for single-cell genomics

scvelo

RNA Velocity generalized through dynamical modeling

scvi-tools

Deep probabilistic analysis of single-cell omics data

scVI_vampPrior

A new scVI model with vampPrior

seurat

R toolkit for single cell genomics

SpiceMix

spatial transcriptome, single cell

tabula-sapiens

Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens

tricycle