wm75

tools-iuc

Tool Shed repositories maintained by the Intergalactic Utilities Commission

viramp-hub

ansible-covid-db

Docker-compose setups for hosting a Covid19 database based on PG

artic-ncov2019

ARTIC nanopore protocol for nCoV2019 novel coronavirus

bioconda-recipes

Conda recipes for the bioconda channel.

training-material

A collection of Galaxy-related training material

BioExt

A few handy bioinformatics tools not already within BioPython

BioinformaticsII-pages

cpython

The Python programming language

galaxy

Data intensive science for everyone.

galaxy-data_source-examples

Examples of Galaxy data_source servers

galaxy-hub

Galaxy Community Hub

Galaxy-XSD

Galaxy XML tool wrapper XSD

galaxytools

:microscope::books: Galaxy Tool wrappers

gx-sequence-utils-rs

infectious-diseases-toolkit-sandbox

Infectious diseases toolkit SANDBOX

ivar

iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.

iwc

Intergalactic Workflow Commission

minimal-actions

my_starship_config

numerize

Convert large numbers into readable numbers for humans.

pangolin

Software package for assigning SARS-CoV-2 genome sequences to global lineages.

planemo

Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training materials.

poreCov

SARS-CoV-2 workflow for nanopore sequence data

sars-cov-2-ont-artic-variant-calling

SARS-CoV-3

Daily analyses of genomic SARS-CoV-2 data

snipit

snipit: summarise snps relative to your reference sequence

usegalaxy-tools

usegalaxy.* common tools

varVAMP

Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.

wm01-ox

WM-01 course, Summer Semester 2021, Faculty of Biology, University of Freiburg