W. Lee Pang, PhD's starred repositories

aws-java-nio-spi-for-s3

A Java NIO.2 service provider for Amazon S3

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miniwdl-cloud

SUPERSEDED BY https://github.com/miniwdl-ext/miniwdl-aws

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nextflow

A DSL for data-driven computational pipelines

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genomics-secondary-analysis-using-aws-step-functions-and-aws-batch

This solution provides a framework for Next Generation Sequencing (NGS) genomics secondary-analysis pipelines using AWS Step Functions and AWS Batch.

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nextflow-aws-batch-squared

Run Nextflow on AWS Batch (Squared)

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scipy-2019-rapids-tutorial

Materials for the SciPy 2019 RAPIDS tutorial

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miniwdl

Workflow Description Language developer tools & local runner

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travel_guide_portland

A guide to visiting, dining, and exploring Portland, OR using Github PRs as the mechanism to keep updated. Forked off of https://github.com/triskadecaepyon/travel_guide_engine

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manim

Animation engine for explanatory math videos

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aws-genomics-workflows

Genomics Workflows on AWS

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test_db

A sample MySQL database with an integrated test suite, used to test your applications and database servers

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dash

Data Apps & Dashboards for Python. No JavaScript Required.

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pluginbase

A simple but flexible plugin system for Python.

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RInno

How to install local shiny apps

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hyper

A terminal built on web technologies

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altair

Declarative statistical visualization library for Python

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rodeo

A data science IDE for Python

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dfply

dplyr-style piping operations for pandas dataframes

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pgcli

Postgres CLI with autocompletion and syntax highlighting

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docker-stacks

Ready-to-run Docker images containing Jupyter applications

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jupyter_client

Jupyter protocol client APIs

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jupyterlab

JupyterLab computational environment.

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jupyterhub

Multi-user server for Jupyter notebooks

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jupyter

Jupyter metapackage for installation, docs and chat

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capsule

Python module for creating development environments as Docker containers, similar to virtualenv.

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sofi

an OS agnostic UI module for Python

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pywebview

Build GUI for your Python program with JavaScript, HTML, and CSS

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remi

Python REMote Interface library. Platform independent. In about 100 Kbytes, perfect for your diet.

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cultivar

Multidimensional data explorer and visualization tool.

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