W. Lee Pang, PhD's repositories
DesktopDeployR
A framework for deploying self-contained R-based applications to the desktop
shiny-directory-input
An shiny input widget for selecting directories
shiny-pager-ui
A paging input for R/Shiny applications
sagemaker4research-workshop
Amazon SageMaker for Researchers Workshop
aws-genomics-workflows
Genomics Workflows on AWS
demo-genomics-workflow-nextflow
Demo genomics workflow for nextflow
cromwell-hackathon
utilities for cromwell hackathon
reinvent-2018-wps201
re:Invent 2018 - Builder Session WPS201
aws-step-functions-developer-guide
The open source version of the AWS Step Functions Developer Guide. You can submit feedback & requests for changes by submitting issues in this repo or by making proposed changes & submitting a pull request.
cromwell-docker
docker container for running cromwell
data-repository-service-schemas
A repository for the schemas used for the Data Repository Service.
fsx-lustre-genomics-demo
Demo using FSx for Lustre for genomics workflows
miniwdl-aws
Extends miniwdl to run workflows on AWS Batch & EFS
open-data-registry
A registry of publicly available datasets on AWS
pandas
Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more
quickstart-hail
AWS Quick Start Team
rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
scipy-agenda
Make a scipy agenda
snakemake
This is the development home of the workflow management system Snakemake. For general information, see
travel_guide_portland
A guide to visiting, dining, and exploring Portland, OR using Github PRs as the mechanism to keep updated. Forked off of https://github.com/triskadecaepyon/travel_guide_engine
wdlRunR
Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources