hkim's repositories
snakemake_nextflow_wdl
simple comparison of snakemake, nextflow and cromwell/wdl
ChIA-view
20191127
2DImpute
Imputation in single cell RNA sequencing data using correlations from two dimensions
dolphinnext
A graphical user interface for distributed data processing of high throughput genomics
TumorType-WGS
Classifying tumor types based on Whole Genome Sequencing (WGS) data
CycleViz-1
Visualize outputs of AmpliconArchitect and AmpliconReconstructor in Circos-style images.
debrowser
Differential Count Data Analysis Toolbox
Blacklist
Application for making ENCODE Blacklists
neural-networks-for-breast-cancer-proteins
Machine Learning for breast cancer protein screening
ecSimulator
Simulate rearranged focal amplifications such as ecDNA and BFB.
sumnerdocs
Sumner HPC Documentation - Beta and Unofficial!
nextflow-tutorial
Nextflow training material for introductory tutorial
PrepareAA
A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior to running AmpliconArchitect.
Sarek
Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
CN_Learn
CN-Learn
ChIA-DropBox
add support to SRRxxx fastq.
biomedicalresearch2019
Course Materials for EN.601.452 / AS.020.415 Computational Biomedical Research & Advanced Biomedical Research
hmftools
Various utility tools for working with genomics data
jax-tutorial
Tutorial for Jackson Labs intro to Nextflow, containers, FlowCraft and Deploit
Watershed
Prioritization of functional rare genetic variants by integrating genomic annotations and RNA-seq