willtownes

jax

Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more

COVID-19

Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE

PRML

PRML algorithms implemented in Python

NYU-DLSP20

NYU Deep Learning Spring 2020

theme-academic-cv

🎓 无需编写任何代码即可轻松创建漂亮的学术网站 Easily create a beautiful academic résumé or educational website using Hugo and GitHub. No code.

rsub

Use rmate with Sublime Text.

hSBM_Topicmodel

Using stochastic block models for topic modeling

hpc_beginning_workshop

removing_tedium

jupyter-app

A standalone OS X app for Jupyter. Runs Jupyter Lab/Notebook in its own separate browser. Allows for the launching of Jupyter Lab/Notebook from the dock just like any other app, and it even comes with its own pretty Jupyter icon. Built using bash and Chrome

scHPF

Single-cell Hierarchical Poisson Factorization

bipartiteSBM

A Bayesian model+algorithm for community detection in bipartite networks

seqFISH-PLUS

scGeneFit-python

Python code for genetic marker selection using linear programming

tnbc_scrnaseq

CountClust

A R package for Grade of Membership model and Visualization of counts data:

DRComparison

Comparison of dimensionality reduction methods

dpcca

Code for the paper "End-to-end training of deep probabilistic CCA on paired biomedical observations".

netNMF-sc

netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data

scry

Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).

maptpx

map estimation of topic models

Splotch

Splotch is a hierarchical generative probabilistic model for analyzing Spatial Transcriptomics (ST) data

developing_mouse_retina_scRNASeq

10x single cell RNA-seq data from the developing mouse retina

sc-manifold-alignment

Code and data for Manifold Alignment of Multiple single cell data

avagrad

Implementation of AvaGrad

GAS

Generalized association study for matched non-Gaussian data

arsvd

Adaptive randomized singular value decomposition

data

niranjaniprasad.github.io

Website

AdamR

Implementation of Adaptive Moment estimation (Adam) for general-purpose optimization