Will Moore's repositories
openmicroscopy
OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities, research establishments and industry in Europe and the USA, OME has over 20 active researchers with strong links to the microscopy community. Funded by private and public research grants, OME has been a major force on the international microscopy stage since 2000.
ome-ngff-validator
Web page for validating OME-NGFF files
zarr-python
An implementation of chunked, compressed, N-dimensional arrays for Python.
cookiecutter-omero-webapp
Cookiecutter to create OMERO.web apps
deployment
Deployment infrastructure for the Image Data Resource
idr_tables
svelte-based web app for browsing OMERO.tables in IDR and opening in parade
napari-ome-zarr
A reader for zarr backed OME-NGFF images
ome-documentation
Sphinx-based documentation for the Open Microscopy Environment
ome-zarr-py
Experimental implementation of images in Zarr files.
ome2024-ngff-challenge
Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data
omero-cli-render
OMERO command-line tool for rendering
omero-demo-cleanup
A CLI plugin for managing the disk space on the OME demo server
omero-iviewer
An OMERO.web app allowing to view images
omero-mkngff
Plugin to swap OMERO filesets with NGFF
omero-scriptui
Experimental web-based UIs for OMERO scripts
omero-skye
SvelteKit based app for browsing data from OMERO
omero-web-zarr
Implementation of OME-Zarr API with an omero-web app
python-scripts
Just a bunch of python code samples I have created for testing or responding to forum.image.sc.
zarrita.js
A JavaScript toolkit for working with chunked, compressed, n-dimensional arrays