wenhaoggg

vpn

快速搭建一个自己的VPN翻墙科学上网

remora

Methylation/modified base calling separated from basecalling.

CHEUI

Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing

RNARePore

Direct detection of RNA repair by nanopore sequencing

NLP_ability

总结梳理自然语言处理工程师(NLP)需要积累的各方面知识，包括面试题，各种基础知识，工程能力等等，提升核心竞争力

scidataflow

Command line scientific data management tool

MMSplice_MTSplice

Tissue-specific variant effect predictions on splicing

KARR-seq

RNA_assessment

Basic RNA 3D structure comparison metrics in RNA-Puzzles, including INF, DI and RMSD. It also includes `RNA_normalizer` tool in pdb_utils.

RibonanzaNet

tch-rs

Rust bindings for the C++ api of PyTorch.

single-cell-best-practices

https://www.sc-best-practices.org

XGBoostLSS

An extension of XGBoost to probabilistic modelling

SingleCellWorkshop

SingleCellCourse

ikarus

Identifying tumor cells at the single-cell level using machine learning

changeseq

CHANGE-seq analysis pipeline

graphml-tutorials

Tutorials for Machine Learning on Graphs

mamba

Mamba SSM architecture

awesome-CRISPR

List of software/websites/databases/other stuff for genome engineering

mda

Revealing Hidden Patterns in Deep Neural Network Feature Space Continuum via Manifold Learning (Nature Communications, 2023)

gradio

Build and share delightful machine learning apps, all in Python. 🌟 Star to support our work!

llm-course

Course to get into Large Language Models (LLMs) with roadmaps and Colab notebooks.

Rust

All Algorithms implemented in Rust

noodles

Bioinformatics I/O libraries in Rust

SnapATAC2

Single-cell epigenomics analysis tools

awesome-beamer

Creating presentation slides by using Beamer in LaTeX.

rustlings

:crab: Small exercises to get you used to reading and writing Rust code!

awesome-multi-omics

List of software packages for multi-omics analysis

Benchmark-of-RNA-Editing-Detection-Tools

Benchmark analysis of RNA editing detection tools