weitzner

jhu-thesis-template

JHU Thesis Template

HBNetGen_example

This repository contains the necessary scripts and commands to recapitulate generating pre-organized hydrogen bonding networks, cluster and match them into protein scaffolds.

pymol-rosetta-utils

PyMOL visualization shortcuts that use Rosetta

rifdock-recipes

Conda recipes for rifdock.

rosettaAnalysis

An R package for performing common analyses from Rosetta simulations

rifdock

Rifdock Library for Conformational Search

pi-services

The things I run on my raspberry pi

alphafold

Open source code for AlphaFold.

bioconda-recipes

Conda recipes for the bioconda channel.

cowplot

CV

My CV

dnassembly

Streamlined DNA assembly in Python

docker-pi-hole-dot

Pi-hole Docker image from pi-hole.net with unboud DNS over TLS providers

dotfiles

Configuration files the way we like 'em

homog

macports-ports

The MacPorts ports tree

nglview

IPython widget to interactively view molecular structures and trajectories

OligoOverlapOpt

Alternative version of script for overlap optimization from "Multiplex pairwise assembly of array-derived DNA oligonucleotides"

params_file

A python module for generating params files for Rosetta

PlanYourNextEclipseViewing

Talk for PyCon 2019

poinsettia

I can't believe it's not Rosetta!

privileged_residues

pyrosetta.distributed

rif

Rotamer Interaction Field Python Libraries for Computational Protein Design

Rosetta

tao-of-tmux

Spin-off book for tmuxp's documentation of "The Tao of Tmux"

tmol

TMol

trRosetta2

Repository for publicly available deep learning models developed in Rosetta community

Ultimate-Blocklist

A super blocklist made from the most popular ones on the web!

weitzner.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes