RosettaCommons

RoseTTAFold

This package contains deep learning models and related scripts for RoseTTAFold

RFdiffusion

Code for running RFdiffusion

PyRosetta.notebooks

Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design

binder

Binder, tool for automatic generation of Python bindings

RFDesign

Protein hallucination and inpainting with RoseTTAFold

protein_generator

Joint sequence and structure generation with RoseTTAFold sequence space diffusion

DeepAb

Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.

rosetta

The Rosetta Bio-macromolecule modeling package.

Rosetta-DL

A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons

FvHallucinator

rosetta_clone_tools

A public repository with scripts and tools for cloning and setting up RosettaCommons repositories.

AF2_peptide_hallucination

Code for designing binders to flexible peptides with AlphaFold2 Hallucination

pybind11

Seamless operability between C++11 and Python

pyrosetta_viewer3d

Display PackedPose objects, Pose objects, or PDB files within a Jupyter notebook and Google Colab

demos

Demos of many Rosetta applications

rosetta_scripts_scripts

This is the repository where all developers writing protocols in XML should place all of their scripts

bakerlab_dotfiles

Configuration files the way we like 'em

jade2

General repository for python modules and scripts to aid in the design, analysis, and modeling of biomolecules.

pyrosetta_colab_setup

Files for our auxiliary pyrosetta_colab_setup PyPI package

pyrosetta_scripts

A place in which scripts developed in PyRosetta can be stored and shared. In the not too distant future, these scripts will be tested along side the main repository to ensure that they continue to work even if we make changes to the interfaces of core classes.

tools

Tools for parsing Rosetta source code and scripts for running specific Rosetta applications.

alphafold

Open source code for AlphaFold.

rdkit

The official sources for the RDKit library

tensorflow_graphs

trRosetta model binaries for using the trRosetta protocol within Rosetta proper

bcl_rosetta

A version of the Biochemical Library (BCL; https://github.com/BCLCommons/bcl) for integration with Rosetta.

privileged_residues

scientific_benchmark_data

various input data for scientific benchmark tests

additional_protocol_data

A repository for holding canonical inputs for Rosetta used by some (but not all) protocols; this is for data too big to go in main/database and that is not tightly coupled to the code in main/.

documentation

Documentation for Rosetta Applications

AutoRotLib