wdecoster

NanoPlot

Plotting scripts for long read sequencing data

nanopack

An overview of all nanopack tools

nanofilt

Filtering and trimming of long read sequencing data

chopper

cramino

A *fast* tool for BAM/CRAM quality evaluation, intended for long reads

nanocomp

Comparison of multiple long read datasets

methplotlib

Plotting tools for nanopore methylation data

nanoQC

Quality control tools for nanopore sequencing data

nanostat

Create statistic summary of an Oxford Nanopore read dataset

nanolyse

Remove lambda phage reads from a fastq file

surpyvor

A python wrapper around SURVIVOR

kyber

phasius

nanoget

Functions to extract information from Oxford Nanopore sequencing data and alignments

nanomath

A few simple math function for other Oxford Nanopore processing scripts

PromisingPreprint

A python twitter bot tweeting about preprints reaching an interesting altmetric score

STRdust

Tandem repeat genotyping from long reads

make_arrow

A Rust tool to create an arrow file from a cram/bam file

nanotest

Small test datasets for testing nanopack scripts and modules

pathSTR

Repository with code for the analysis of pathogenic STRs in the 1000G ONT resequencing data

BLAZE

SingleCell Nanopore sequencing data analysis

INSurVeyor

An insertion caller for Illumina paired-end WGS data.

minimap2-rs

misc

A mishmash of scripts written during my PhD

modkit

A bioinformatics tool for working with modified bases

rosalind-in-rust

Sniffles

Structural variation caller using third generation sequencing

Spectre

Copy number caller for long read data including SNV utilization

straglr

STRling-nf

Nextflow implementation of STRling data flow