Kennedy Mwangi's repositories
tbrucei_gcn
Code used in the analysis pipeline of T. brucei Gene Co-expression Network study
BOSS22
Bioinformatics Hub of Kenya Conference, 26-29 April 2022
breast_cancer_ctc
An RNA-Seq data analysis pipeline tutorial to reprocess data for breast cancer circulating tumor cells (CTC) from a recent study (PMID: 29868978)
CDR3_physicochem_analysis
Analyze the physicochemical properties of recovered VDJ sequences
Data-mining
Data mining to discover trends in Open Science in Kenya
eupathdb-organismdb
Scripts to help automate the process of generator Bioconductor OrgDb, TranscriptDb, and OrganismDb packages for species hosted on EuPathDB
intbt_2019
Training material for H3ABioNet 16S rRNA Microbiome Intermediate Bioinformatics Training 2019
intbt_2020
Training material for H3ABioNet 16S rRNA Microbiome Intermediate Bioinformatics Training 2020
Introduction_to_Linux
Linux introduction
LandMacharia
Class assignment on the analysis of epidemiological data
learning_git
This repository is for learning git and github (beginner level)
learning_nextflow
Tutorial on how to use nextflow to create a workflow for blast
manuscript-shared-rnaseq
R and Rmarkdown code used across multiple RNA-Seq projects.
Mount-Kenya-University-Bioinformatics-workshop-2022
A repository with data, scripts and results of the 1st Bioinformatics MKU workshop
MyFirstFork
Fork this repository and make changes to the README
new_project
Template for a reproducible project's directory organization from SchlossLab
OpenScience_in_Africa
BOSS mini project on evaluating the current status of open science in Africa
org.Tb927.tritryp.db
Genome-wide annotation package for Trypanosoma brucei brucei TREU927
python-intermediate-inflammation
Learning python during the 'Research Software Camp: Next steps in coding' event organized by the Software Sustainability Institute
ReproducibleResearchRStudio
This is a basic introductory course material prepared for the Open Science Workshop, Nairobi.
sars-cov-2-genomics-and-bioinformatics-2024
An open-source project for creating online courses, built by P2PU
solving_rosalind_problems
Documentation of my solutions to Rosalind bioinformatics problems available at https://rosalind.info/problems/locations/
Status-of-OpenScienceKE-LiteratureSearch
Scan online literature databases for status of Open Science in Kenya
taxonomizr
Parse NCBI taxonomy and accessions to find taxonomix assignments
TeachingJupyterNotebooks
Training materials for the Open Science Workshop held in Nariobi
testing
Test Repo - Open Science Training
Trypanosoma.brucei.TREU927
Genome-wide annotation package for Trypanosoma brucei brucei TREU927
TxDb.TbruceiTREU927.tritryp43.genes
Transcript annotation package for Trypanosoma brucei brucei TREU927