wangdi2014's repositories
gfortran-for-macOS
GNU Fortran (and GCC) compilers for macOS
DRPPM-PATH-SURVEIOR-Pipeline
As part of the DRPPM-PATH-SURVEIOR family, this pipeline aims to identify top pathways and genes that are significant in High-Risk patients
SKESA
SKESA assembler
kent
UCSC Genome Browser source tree. Stable branch: "beta".
nextclade
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
neoepiscope
predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data
alphafold
Open source code for AlphaFold.
stag
A hierarchical taxonomic classifier for metagenomic sequences
assembly-stats
Get assembly statistics from FASTA and FASTQ files
smufin-core
Mutation Finder and Genome Comparison Toolset
gwas-download
Easily download publicly available GWAS summary statistics.
cfSNV
cfSNV: An R tool of sensitively detecting tumor mutations from cell-free DNA in blood
cognac
cognac: COre GeNe Alignment Concatenation
GWASTools
Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis
RepeatModeler
De-Novo Repeat Discovery Tool
cgfind
Minimal way to find and download complete prokaryotic genomes
mauve-viewer
A Whole Genome Alignment Visualization Tool for the Web
seqrequester
A tool for summarizing, extracting, generating and modifying DNA sequences.
pheweb
A tool to build a website to browse hundreds or thousands of GWAS.
DeepCDR
Cancer Drug Response Prediction via a Hybrid Graph Convolutional Network
SeqMule
Automated human exome/genome variants detection from FASTQ files
qmplot
A Python package for creating high-quality manhattan and Q-Q plots from GWAS results.
gwas2vcf
Convert GWAS summary statistics to VCF
fart-it
Find And Replace Text command line utility. New & improved version of the well-known grep command, with advanced features such as: case-adaption of the replace string; find (& replace) in filenames, auto CVS edit.
DDC
A data-driven approach for constructing mutation categories for mutational signature analysis
SignatureAnalyzer-GPU
GPU implementation of ARD NMF
OLGA
Compute generation probabilities of CDR3 amino acid and nucleotide sequences
LDBlockShow
LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files