vsoch

findPlagarism

Find plagarism in text via a Google Search. You will need to tweak the input file to your specific format.

fvplay

MATLAB scripts is intended for visualizing and preparing raw data for use with a supervised classifier

gene2drug

A toolbox to find if gene sets and drugs are meaningfully related [in development]

MRtools

Module for neuroimaging data manipulation and sample applications

gsea

Gene set enrichment analysis file preparation, and submission scripts to run with gsea .jar on Sherlock

imageSearch

image-based image search in python

signal-processing

A quick matlab demo of signal processing

alleninf

Compare a statistical map of a brain with gene expression patterns from Allen Human Brain Atlas.

brainmeta-www

cloud infrastructure for evaluating image comparison methods

chunkRank

The Chunk Indifferent Ranking Algorithm for scoring accuracy of grouped ranked list

cMapParse

Functions to select, read, and filter connectivity map (cmap) data instances, for input into a GSEA analysis

Cosmos-GCE

Cluster to run on GCE for Cosmos and Genomekey

DevelopmentalEnrichment

Enrichment of disorders in brainspan Developmental data

DisorderEnrichment

Enrichment of disorders in Allen Brain Atlas

DNS

Methods for analysis of Duke NeuroGenetics Study data - goal is to make connections between behavior and genes!

genetime

predict "important" time periods for a list of gene probes based on RNA-seq expression

gutmap

Gut Microbiome Mapping

myconnectome-d3

Simplified version of myconnectome d3 visualization

myconnectome_d3

d3 Network work for the myconnectome project

neuro2gene

discover genetic signature of behavior informed by neuroimaging

nextbio

Preprocessing module functions for nextbio output files

nsynth2ca

A simple mapping of the neurosynth database terms to the cognitive atlas

taskfmri

Task fMRI Project

theMethodsOntology

vvcftools

Vanessa's vcf tools for simple working with variant call format files