Venkat Malladi's repositories
atac-seq-pipeline
ENCODE ATAC-seq pipeline
CromwellOnAzure
Microsoft Genomics supported implementation of the Broad Institute's Cromwell workflow engine on Azure
ga4gh-starter-kit-wes
Starter Kit server implementation of the GA4GH Workflow Execution Service (WES) specification
MultiQC_TestData
Test data for MultiQC. See https://github.com/ewels/MultiQC
nf-sentieon
POC Nextflow pipeline to run Sentieon software
pb-human-wgs-workflow-snakemake
Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads
public_health_viral_genomics
Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, especially SARS-CoV-2
tools
Python package with helper tools for the nf-core community.
viral-pipelines
viral-ngs: complete pipelines
warp
WDL Analysis Research Pipelines
workflow-execution-service-schemas
The WES API is a standard way to run and manage portable workflows.